Bayesian Inference for Diffusion Processes with Applications in Life Sciences

Abstract

Diffusion processes are a promising instrument to realistically model the time-continuous evolution of natural phenomena in life sciences. However, approximation of a given system is often carried out heuristically, leading to diffusions that do not correctly reflect the true dynamics of the original process. Moreover, statistical inference for diffusions proves to be challenging in practice as the likelihood function is typically intractable. This thesis contributes to stochastic modelling and statistical estimation of real problems in life sciences by means of diffusion processes. In particular, it creates a framework from existing and novel techniques for the correct approximation of pure Markov jump processes by diffusions. Concerning statistical inference, the thesis reviews existing practices and analyses and further develops a well-known Bayesian approach which introduces auxiliary observations by means of Markov chain Monte Carlo (MCMC) techniques. This procedure originally suffers from convergence problems which stem from a deterministic link between the model parameters and the quadratic variation of a continuously observed diffusion path. This thesis formulates a neat modification of the above approach for general multi-dimensional diffusions and provides the mathematical and empirical proof that the so-constructed MCMC scheme converges. The potential of the newly developed modelling and estimation methods is demonstrated in two real-data application studies: the spatial spread of human influenza in Germany and the in vivo binding behaviour of proteins in cell nuclei.

• Item Type: Thesis (Dissertation, LMU Munich)
• Keywords: diffusion processes, stochastic differential equations (SDE), stochastic modelling, diffusion approximations, Bayesian inference, MCMC, data imputation, innovation scheme, life sciences, epidemics, influenza, fluorescence recovery after photobleaching (FRAP)
• Dewey Decimal Classification: 600 Natural sciences and mathematics > 510 Mathematics; 600 Natural sciences and mathematics
• Faculties: Faculty of Mathematics, Computer Science and Statistics
• Language: English
• Date Accepted: 22. September 2010
• 1. Referee: Fahrmeir, Ludwig
• Persistent Identifier (URN): urn:nbn:de:bvb:19-121361
• Signature of the printed copy: 0001/UMC 18959